PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000272940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 338aa    MW: 36707.7 Da    PI: 9.9401
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000272940genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31269327259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp ++++tYegeH+h 
  MDP0000272940 269 ADEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 327
                    69************************9888****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.7E-19213266IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-32256327IPR003657WRKY domain
PROSITE profilePS5081130.469263329IPR003657WRKY domain
SuperFamilySSF1182903.66E-26266327IPR003657WRKY domain
SMARTSM007741.1E-37268328IPR003657WRKY domain
PfamPF031061.0E-26270326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAVELMNFPK MEDQKAIQEA ASQGLQSMEH LIRFLSHQQQ QSNNQSARVD CTDITDHTVS  60
KFKKVISLLN RTGHARFRRG PVQPVHFPTS HPSSSQTLNL ASALNLTPTP APAPVTTPAI  120
VPSTPIELSF VQSQPHSMTL DFTRPNAFXS NPKSAEIEFA KESFSVSSSS SFMSSAITGD  180
GSVSNGKLGS SIFLAPAPAV SGAKPPLSTA PXKKRCHEHD HSDDTSCKFS GSGSASGSGK  240
CHCSKRRKNR VKKTIRVPAI SSKIADIPAD EYSWRKYGQK PIKGSPYPRG YYKCSTVRGC  300
PARKHVERAP DDPAMLIVTY EGEHRHAPEN VGLVXEST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21256326271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164990.0bud| cell culture| fruit| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9960680.0KJ996068.1 Pyrus x bretschneideri WRKY domain class transcription factor (WRKY16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393940.10.0PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SV151e-140WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A088NF590.0A0A088NF59_9R
STRINGVIT_04s0069g00920.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.21e-114WRKY DNA-binding protein 11